CDS

Accession Number TCMCG006C01155
gbkey CDS
Protein Id XP_022575485.1
Location complement(join(28598674..28598738,28599280..28599424,28599510..28599665,28599750..28600065,28600162..28600469,28600660..28602559,28602664..28602806,28602916..28603003,28603247..28603330,28603413..28603489,28603634..28603768,28604345..28604542))
Gene LOC106415087
GeneID 106415087
Organism Brassica napus

Protein

Length 1204aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_022719764.1
Definition pre-mRNA-splicing factor prp12-like isoform X2 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category A
Description cleavage and polyadenylation specificity factor (CPSF) A subunit
KEGG_TC -
KEGG_Module M00352        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12830        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000151        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010498        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0031461        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043161        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGGCTCCGGAGGATGAATCTTCCGCTCAGTCTCAATCTTCCTCTGCCGCTGCGGCGGCTCCCACTCCTCCTCCTCCTCCTTCCTCCGCCGGGGATCATTACCTCGCTAAGTGCGTCCTCCGCCCCAGCGTCGTTCTCCAGGTTGCTTATGGCTATTTCCGCTCTCGCTCCTCCCGCGACATAGTTTTCGGCAAGGAGACCTGCATAGAGGTGGCGGTTATCGGTGAAGACGGGGTTGTTGAATCGGTGTGTGAACAGAATGTATTTGGAACTATTAAGGATTTGGCTGTTATACCTCAGAGTAATAAACCGTACTCAAATAGTTTTCAGATGGGTAAAGACCTTTTGGCTGTTCTTTCTGATTCTGGAAAGCTCTCATTTCTCTCATTTAGCAATGAAATGCACAGGTTCTCGCCGATACAACATGTTCAACTTTCTAGTCCAGGAAATTCGAGGGACCAACTTGGAAAAATGCTCACTGTAGATTCTAGCGGACTTTTTCTTGCTGTCAGTGCATATCATGATCGCTTTGCGCTATTTTCCCTCTCAACATCGTCTATGGCTGATATTATTCTTAAGAGGATATTTTATCCTTCTGAAGACGGAGGGAAGGCTAGCTCTGAACAAGCAGTATCTGGTACTATTTGGAGCATGTGTTTCATTTCTAAAGGTTTTAATGAGTCCATGGATTATGATCCTGTTCTTGCCATCGTTTTAAATAGGAAAGGGTCTCTCCTGAATGAGCTGGTTTTGTTTAGATGGAATGTCAAGGAGGAATCCATATGTTTAATATCAGAGTATGTTGAAGCTGGGGCTCTAGCACATAGTATTGTCGAAGTTCCTCACTCCTCTGGATTCGCCTTTCTGTTAAGGATGGGTGATGCGCTCTTAATGGATCTTAGAGATCCTCAGAACCCTTGCTGTTTGGTTAGGACGTCCTTAGATCTTGTTCCTGCATCATTAGTGGAAGAGCAGTTTCTTGAAGAGTCGTGTAGAGTACAAGATGGAGACGATGAGGGCCTTTTTAATGTTGCCGCATGTGCTTTGTTAGAGCTAAGGGATTATGATCCCATGTTCATTGATAATGAAAGTGACAATGGAAAGTTGAGCTCCAAGCATGTCTCTTCATGGACTTGGGAGCCGCCGGAACATAATCACAATCCCCGGATGATTATTTGCTTAGATGATGGCGAATTTTTCATGTTTGAGCTCATCTATGAAGATGATGGGGTTAAAGTTAATGTATCAGAGTGTTTATACAAAGGTCTACCGTGCAAGGAAATATTATGGGTGGAAGGTGTGTTCCTGGCCACGTTCGCCGAAATGGCTGATGGAACGGTTTTCAAAGTGGGAACCGAGAAGCTACATTGGATGAGTTCCATTCAAAATATAGCTCCGATCTTGGATTTCTCAGTTGTGGATGACCAGAACGAGAAACGAGACCAAATCTTTGCTTGCTGTGGCGTAACGCCTGAAGGCTCTTTAAGGATTATCCGTAGTGGCATTAACGTAGAAAAACTTCTGAAAACCGCACCTGTTTATCAAGGAATCACTGGTACTTGGACCGTTAAAATGAAGCTTACTGATGTGTACCATTCATTCCTTGTTCTGTCGTTTGTTGAAGAGACAAGGGTCTTATCAGTTGGATTAAGTTTTAAAGATGTCACCGATTCAGTTGGTTTCCAGCCTGATGTTTGCACCTTGGCGTGTGGACTCGTTGCCGATGGTTTGTTGGTTCAGATTCACCGAGATGCAATAAGGCTGTGCATGCCCACCGTGGATGCTCATGCTGATGGCATTCCTGTTTCTTCACCGTTTTTCTCCTCTTGGTTTCCAGAAAATGTCAGTATCAGCTTGGGGGCAGTCGGTGAAAATCTGATAGTTGTGTCTACGTCTAACCCTTGTTTCCTGTCTATTCTCGGAGTCAAATCAGTATCATCTCAGTGCTGTGAAATCTATGAGATTCAACGAGTAACATTGCAGTATGAAGTCTCCTGCATCTCAGTTCCTCAAAAATATATTGGAAAAAAGAGACCACGCGCTTGTGCCGTGGATAATAGTTGTAGTAAAGCTGCGATTCCCTCTGGTATGGAGCGAGGCTATACGTTTCTGATTGGCACACATAAGCCTTCTGTTGAGATCGTCTCCTTCTCAGAAGAAGATGGTGGTGGTGTTCGAGTCCTTGCTTCTGGGAGGGTATCGCTAACAAACACAATGGGAACTGTTATCAGTGGATGTATTCCTCAAGATGTAAGACTCGTGTTAGTTGATCAAGTTTATGTCCTTTCTGGGTTAAGAAATGGAATGCTGCTACGTTTTGAGTGGCCTCCCTTTTCACATTCATCCGGTCACTGTAAAGAAGAGATGGACAGTGTTGCGAGTGACCTTCTGTTAATTGCCACCCGACGTATCGGCATCACACCTGTTTTTCTGGTTCCGCTCAGTGATTCACTAGATTCAGACATCATAGCTCTTAGTGACAGGGCATGGTTGTTACAAACAGCTCGGCAAAGTCTTTCCTACACTTCCATCTCATTCCAACCTTCTACCCATGCAACTCCTGTATGCTCGCCTGAATGCCCTCAAGGAATTCTTTTTGTTGCAGAGAACTGTTTACATCTGGTGGAGATGGTGCACAGCAAACGGCTTAATGCGCAAAAGTTTCACCTTGGAGGCACTCCGCGAAAGGTTATCTACCATAGTGAAAGCAAACTATTGATTGTGATGAGAACTGATTTGTATGATGCGTGTACGTCTGATATATGCTGTGTGGACCCGCTCAGTGGGTCAGTGTTATCATCCTACAAGCTCAAACCTGGAGAAACTGGAAAGTCAATGGAGCTTGTACGTGTGGGAAATGAGCAGGTCCTTGTGGTTGGGACGAGTTTGTCTTTTGGTCCTGCTATACTACCCAGTGGTGAAGCTGAAAGTACAAGAGGCCGATTAATCATTCTCTGCTTAGAACACACTCACAACTCGGATAGTGGTTCAATGACAATCTGCTCAAAGGCTGGTTCATCTTCCCAACGTACATCGCCTTTTCGTGATGTTGTGGGATGCACAACAGAGCAACTATCAAGCAGTAGTCTCTGCAGCAGTCCTGATGATAACAGCTATGATGGAATCAAAATTGATGAATCTGAAACATGGCATTTGAGATTGGCCTGTGCAACAACTTGGCCTGGAATGGTACTTGCCATCTGTCCATACCTTGATCATTTCTTCCTAGCGTCTGCTGGCAATGCTTTCTATGTATGCGGCTTTCCGAACGATAGTCCTGAGAGAATGAAAAGGTTTGCAGTGGGAAGGACTCGTTTCATGATAACATCTCTGCGCACATACTTCACGAGAATTGTTGTTGGGGATTGCCGTGATGGTGTTCTATTCTATTCTTATCATGAGGATGTGAAGAAACTTCACCAAATATATTGTGATCCGGCGCAGCGGTTAGTTGGTGATTGCTTTCTAATGGATGCCAATTCTGTTGCTGTATCTGATCGCAAGGGGAGTATAGCTATCTTGTCTTGCAAAGATCATTCAGACTTTGAAGAATTTGCTAACTGGAAATACATCTTGATGATCCAGAATATTCAAATCCGGAGTCCAACCTGA
Protein:  
MAAPEDESSAQSQSSSAAAAAPTPPPPPSSAGDHYLAKCVLRPSVVLQVAYGYFRSRSSRDIVFGKETCIEVAVIGEDGVVESVCEQNVFGTIKDLAVIPQSNKPYSNSFQMGKDLLAVLSDSGKLSFLSFSNEMHRFSPIQHVQLSSPGNSRDQLGKMLTVDSSGLFLAVSAYHDRFALFSLSTSSMADIILKRIFYPSEDGGKASSEQAVSGTIWSMCFISKGFNESMDYDPVLAIVLNRKGSLLNELVLFRWNVKEESICLISEYVEAGALAHSIVEVPHSSGFAFLLRMGDALLMDLRDPQNPCCLVRTSLDLVPASLVEEQFLEESCRVQDGDDEGLFNVAACALLELRDYDPMFIDNESDNGKLSSKHVSSWTWEPPEHNHNPRMIICLDDGEFFMFELIYEDDGVKVNVSECLYKGLPCKEILWVEGVFLATFAEMADGTVFKVGTEKLHWMSSIQNIAPILDFSVVDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQPDVCTLACGLVADGLLVQIHRDAIRLCMPTVDAHADGIPVSSPFFSSWFPENVSISLGAVGENLIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKYIGKKRPRACAVDNSCSKAAIPSGMERGYTFLIGTHKPSVEIVSFSEEDGGGVRVLASGRVSLTNTMGTVISGCIPQDVRLVLVDQVYVLSGLRNGMLLRFEWPPFSHSSGHCKEEMDSVASDLLLIATRRIGITPVFLVPLSDSLDSDIIALSDRAWLLQTARQSLSYTSISFQPSTHATPVCSPECPQGILFVAENCLHLVEMVHSKRLNAQKFHLGGTPRKVIYHSESKLLIVMRTDLYDACTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEQVLVVGTSLSFGPAILPSGEAESTRGRLIILCLEHTHNSDSGSMTICSKAGSSSQRTSPFRDVVGCTTEQLSSSSLCSSPDDNSYDGIKIDESETWHLRLACATTWPGMVLAICPYLDHFFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEDVKKLHQIYCDPAQRLVGDCFLMDANSVAVSDRKGSIAILSCKDHSDFEEFANWKYILMIQNIQIRSPT